Name and surname:
|
doc. Mgr. Tomáš Vinař, PhD.
|
Document type:
|
Research/art/teacher profile of a person
|
The name of the university:
|
Comenius University Bratislava
|
The seat of the university:
|
Šafárikovo námestie 6, 818 06 Bratislava
|
III.a - Occupation-position | III.b - Institution | III.c - Duration |
---|---|---|
associate professor (before 06/2017 independent researcher) | Comenius University in Bratislava, Slovakia | 01/2009-present |
postdoctoral researcher | Cornell University, USA | 08/2006-12/2008 |
research assistant professor | University of Waterloo, Canada | 09/2005-07/2006 |
technical assistant / assistant | Comenius University in Bratislava, Slovakia | 1994-1999 |
IV.a - Activity description, course name, other | IV.b - Name of the institution | IV.c - Year |
---|---|---|
Test of English as Foreign Language (TOEFL) | ETS | 1998 |
Introductions to methodology of e-learning (short course) | Comenius University in Bratislava | 2021 |
V.1.a - Name of the profile course | V.1.b - Study programme | V.1.c - Degree | V.1.d - Field of study |
---|---|---|---|
Machine Learning | applied informatics; computer science | II. | computer science |
Methods in Bioinformatics | bioinformatics; computer science | I.; II. | computer science, biology; computer science |
Principles of Data Science | data science | I. | computer science, mathematics |
Efficient Algorithms and Data Structures | applied informatics | I. | computer science |
Perspectives of the Current Bioinformatics | bioinformatics | I. | computer science, biology |
Data Management | data science; bioinformatics | I. | computer science, mathematics; computer science, biology |
Genomics | computer science | II. | computer science |
V.2.a - Name of the study programme | V.2.b - Degree | V.2.c - Field of study |
---|---|---|
Data Science | I. | computer science, mathematics (interdiscplinary) |
V.5.a - Name of the course | V.5.b - Study programme | V.5.c - Degree | V.5.d - Field of study |
---|---|---|---|
Bioinformatics Seminar | computer science; applied informatics | II. | computer science |
Algorithmics for Hard Problems | applied informatics | II. | computer science |
Baboon Genome Analysis Consortium. The Comparative Genomics and Complex Population History of Papio Baboons. Science Advances, 5(1):eaau6947. 2019
Kristina Borsova, Evan D. Paul, Viera Kovacova, Monika Radvanszka, Roman Hajdu, Viktoria Cabanova, Monika Slavikova, Martina Lickova, Lubomira Lukacikova, Andrej Belak, Lucia Roussier, Michaela Kosticova, Anna Liskova, Lucia Madarova, Maria Stefkovicova, Lenka Reizigova, Elena Novakova, Peter Sabaka, Alena Koscalova, Brona Brejova, Edita Staronova, Matej Misik, Tomas Vinar, Jozef Nosek, Pavol Cekan, Boris Klempa. Surveillance of SARS-CoV-2 lineage B.1.1.7 in Slovakia using a novel, multiplexedRT-qPCR assay. Scientific Reports, 11(1):20494. 2021.
Bronislava Brejova, Hana Lichancova, Filip Brazdovic, Eva Hegedusova, Michaela {Forgacova Jakubkova}, Viktoria Hodorova, Vladimira Dzugasova, Andrej Balaz, Lucia Zeiselova, Andrea Cillingova, Martina Nebohacova, Vladislav Raclavsky, Lubomir Tomaska, B. Franz Lang, Tomas Vinar, Jozef Nosek. Genome sequence of the opportunistic human pathogen Magnusiomyces capitatus. Current Genetics, 65(2):539-560. 2019.
2021-2024: ALgorithms for PAngenome Computational Analysis, H2020 956229 (MSCA-ITN), ALPACA (principal investigator for the faculty)
2020-2025: Pan-genome Graph Algorithms and Data Integration, H2020 872539 (MSCA-RISE), PANGAIA (principal investigator for the faculty)
2018-2021: Chyby a neurčitosť v sekvenovaní DNA: Algoritmy a modely, VEGA 1/0458/18 (principal investigator)
2019-2023: Non-conventional applications of emerging sequencing technologies in comparative and functional genomics, APVV-18-0239 (principal investigator for the faculty)
2014-2017: Algoritmy a modely pre analýzu komplexných biologických sekvencií, VEGA 1/0719/14 (principal investigator)
2022-2025: Bioinformatika patogénov a pangenómov, VEGA 1/0538/22 (principal investigator)
2021-2023: Pangenomics for personalized clinical management of infected patients based on viral genome and human exome, Operational Program Integrated Infrastructure ITMS2014: 313011ATL7
VII.a - Activity, position | VII.b - Name of the institution, board | VII.c - Duration |
---|---|---|
Student Research Conference, chair / member of the organization committee | Comenius University in Bratislava | 2010-present |
Director of the Data Science Study Porgram | Comenius University in Bratislava | 2020-present |
VIII.a - Name of the institution | VIII.b - Address of the institution | VIII.c - Duration (indicate the duration of stay) | VIII.d - Mobility scheme, employment contract, other (describe) |
---|---|---|---|
University of Waterloo | 200 University Ave W, Waterloo, ON, N2L 3G1, Canada | 09/1999-11/2005 | doctoral studies |
Simon Fraser University | 8888 University Dr, Burnaby, BC, V5A 1S6, Canada | 02/2022-08/2022 | MSCA RISE |